As Gerhard already mentioned, using a C18 column is not the best thing to do here

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Citric acid is something like the worst case for pure reversed phase chromatography - small, highly polar, and even when it's protonated at low pH it will still be highly hydrophilic, so you're not going to see much interaction with a hydrophobic column. You should be able to get decent retention on C18 under ion-pairing conditions using a cationic ion-pairing reagent at higher pH. But still, I'd prefer HILIC, ion-exchange or a suitable mixed-mode column.
The problems you're seeing (unstable retention time) might be the consequence of phase dewetting. Are you using a C18 column suitable for 100% aqueous mobile phases (some sort of "AQ" or EPG column)?
I'd strongly suggest to switch to a different chromatographic mode...