Are you restricted in the detector(s) available to you? If not, I'd use a flame ionization detector as the permanent gases will be essentially invisible. If your sample contains a bunch of water, the flame might be a problem. Wax phases (pick the one you like) are very good for alcohols like methanol.
If the methanol is 6%, what's the rest (air, water, etc.)? You might have to split your sample pretty dramatically when you inject it. Will you use a rotary injection valve? If yes, you'll have to dilute it (with carrier gas or some other inert gas) before you fill the loop.
Sounds like an interesting sampling problem. The analysis will probably be pretty easy if you can nail down a good sampling protocol.