I normally background process sample sets using the option "Use Acquisition Method Set" option and my method set has the instrument and processing method within. But some analysts only use the option "Use Specified Processing Method" and according to the Help page, if you use this option "any specialized processing part of the acquisition method set does not occur, including clear calibration lines in a sample set method".

I tested this by processing a sample set using only a processing method. There was a clear calibration line in the sample set between the system suit standards and the first standard so I expected that line to be ignored and a calibration curve built from ALL the standards but it wasn't- the clear calibration line was obeyed despite the Help document contradicting this. What am I missing here? I run in Run Only mode by the way.