From yoru question, I am guessign that you are using the LECO TOF, so I will answer in terms of the LECO TOF. While the signal does approximately double with each 50 V, the background noise grows also. And, it does not grow with the same function. The important characteristic to get the best sensitivity is signal to noise on analytes of interest. At 2000 volts, the noise may be sufficiently high that your signal to noise has begun to decline. And at 2000 volts, you age the detector more quickly. In the Pegasus instruments that I have used, I have found that there seems to be a sweet spot about 1800 V. And, with a new detector I do not need to go even that high.
The best thing I can suggest is that you check the sensitifity of your instrument by injecting 2 pg HCB and measuring the signal to noise. The specifiction on the Pegasus instruments in 1D operation is a signal to noise of 10:1 on m/z 284 when the peak width is one secon wide. Understand that a number of factors affect this value, starting at the inlet. This becomes a full system check (and is one that I do every day when I am running samples). You can then measure the signal to noise at several different detector voltages to see what the sensitivity is. You may discover that with a new detector you can get noticably better than this sensivity. While you can run the instrument at this better sensitivity, understand that you will not have this sensitivity for the full life of the detector and that the next detector may not be this good. Set your expectation at meeting specification and use the instrument at that level of sensitivity and you will get a good life out of the detector.
Transfer line temperature affects the sensitivity only in that if the transfer line is too cold, peaks may be broadened -- and broad peaks have less height (note for a given mass of material, aways the same area - so wider has to be shorter), or less signal relative to the background noise. Some of the earlier Pegasus instruments did not have good thermal isolation between the transfer line and the ion source. If you can run a transfer line at 270 and an ion source at 220, you do not have this problem.
Source temperature. In the past, I have tended to run an ion source at about 200, but have been told by some who have checked it out, that it gives better results at 220. Remember that increased temperatures increase fragmentation, so this may depend on which ions you are looking at in a spectrum.
For sensitivity - go for narrow peaks. Watch your linear velocity and run close to the optimum flow rate or just a bit faster to keep peaks as sharp as you can. for 1D chromatography, use a ramp that is fast as you can use while still obtaining necesary separation between peaks. Keep the inlet clean and all fittings tight. Watch the leak checks on the instrument. Run the leak check report daily and be sure that the intensity of m/z 28 is below 5% of that of m/z 69. I like to see this level at 2 - 3%. (You may need to be sure the GC is in split mode wiht at least a 35:1 split ratio to avoid intrusion of air through the split vent if you are using a column that requires very little pressure above atmospheric to drive the column.) I have heard the argument that the 5% level is too difficult to reach, but I have done this with several Pegasus instruments - even ones with pressfits installed as part of the GCxGC configuraiton. It just takes careful attention.
And, use the most current version of software available for the instrument. If you have an older instrument running a version before ChromaTOF 3.xx, upgrade it. And if you do not have the latest update of ChromaTOF installed, install it.
So, those are some ideas to get you started.