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- Posts: 1
- Joined: Mon Jun 13, 2022 3:34 pm
I am very new to MS/MS so apologies if my question is not clear.
I am using MHCquant to identify peptides from immunopeptidomics data. For now, I just retrieve the scan ID for each identified peptide, and I visualize the associated mass spectrum on Fresstyle (part of XCalibur).
I would like to get the peak identification in my mass spectrum when I visualize them, to know which peaks were considered as significant for peptide identification and which ion/fragment corresponds to which peak (cf image, I would like to make appear the y, b labels).
Best,
polklin
[url][https://lgatto.github.io/bioc-ms-prot/bss-slides.html#19]